The genetic basis of morphological, behavioral, and reproductive differences between
species can give us clues about the evolutionary processes that yield new species. In this
talk I summarize ten years of work on two closely related species of Drosophila that live on
the oceanic island of Sao Tome, 250 km off the coast of Gabon. After describing the
numerous reproductive barriers, both ecological and physiological, that separate these
species, I summarize the genetic basis of their differences in pigmentation and of their
sexual isolation and the sterility of male hybrids. Because the species form hybrid zones
where their ranges overlap, we also can measure the degree of introgression between the
two species, and show that it differs markedly depending on the region of the genome
analyzed. There are not "islands of speciation" but rather "islands of introgression".
Finally, I describe the hybrid zones between these species and the role of hybridization in
producing heightened reproductive isolation ("reinforcement"). The presence of a hybrid
zone in an area inhabited by only one of the two species presents us with an unsolved
puzzle.